| 2006 Omega Conference Standings | |||||||||||||
| Blue | W | L | T | PCT | PF | PA | HOME | ROAD | DIV | CONF | NON-CONF | STREAK | LAST 4 |
| Mississippi Cottonmouths | 13 | 3 | 0 | .813 | 416 | 258 | 6-2 | 7-1 | 5-1 | 10-2 | 3-1 | Won 8 | 4-0 |
| Birmingham Braves | 7 | 9 | 0 | .438 | 309 | 335 | 4-4 | 3-5 | 2-4 | 6-6 | 1-3 | Won 3 | 3-1 |
| Colorado Divide | 6 | 10 | 0 | .375 | 362 | 387 | 2-6 | 4-4 | 3-3 | 5-7 | 1-3 | Lost -6 | 0-4 |
| Chattanooga Express | 5 | 11 | 0 | .313 | 293 | 350 | 2-6 | 3-5 | 2-4 | 3-9 | 2-2 | Lost -2 | 1-3 |
| White | W | L | T | PCT | PF | PA | HOME | ROAD | DIV | CONF | NON-CONF | STREAK | LAST 4 |
| Pennsylvania Powerhouse | 13 | 4 | 0 | .765 | 475 | 297 | 8-1 | 5-3 | 5-1 | 10-3 | 3-1 | Won 1 | 3-1 |
| Islip Missiles | 13 | 4 | 0 | .765 | 435 | 308 | 8-0 | 5-4 | 4-2 | 10-3 | 3-1 | Won 4 | 4-0 |
| Cleveland Centurions | 5 | 11 | 0 | .313 | 272 | 390 | 2-6 | 3-5 | 2-4 | 4-8 | 1-3 | Won 1 | 2-2 |
| D.C. Federals | 4 | 12 | 0 | .250 | 285 | 341 | 2-6 | 2-6 | 1-5 | 4-8 | 0-4 | Won 1 | 1-3 |
| Red | W | L | T | PCT | PF | PA | HOME | ROAD | DIV | CONF | NON-CONF | STREAK | LAST 4 |
| Florida Whalers | 10 | 7 | 0 | .588 | 358 | 382 | 6-3 | 4-4 | 3-3 | 8-5 | 2-2 | Lost -2 | 1-3 |
| Boston Predators | 9 | 7 | 0 | .563 | 401 | 359 | 3-5 | 6-2 | 5-1 | 8-4 | 1-3 | Lost -1 | 2-2 |
| Providence Patriots | 6 | 10 | 0 | .375 | 234 | 339 | 4-4 | 2-6 | 3-3 | 5-7 | 1-3 | Won 1 | 1-3 |
| Orlando Hammer | 3 | 13 | 0 | .188 | 290 | 407 | 1-7 | 2-6 | 1-5 | 2-10 | 1-3 | Won 1 | 2-2 |
| Green | W | L | T | PCT | PF | PA | HOME | ROAD | DIV | CONF | NON-CONF | STREAK | LAST 4 |
| Louisville Cardinals | 14 | 2 | 0 | .875 | 464 | 272 | 8-0 | 6-2 | 6-0 | 10-2 | 4-0 | Lost -1 | 3-1 |
| Johnstown Flood | 11 | 6 | 0 | .647 | 421 | 350 | 7-1 | 4-5 | 3-3 | 8-5 | 3-1 | Lost -1 | 2-2 |
| New Orleans Pirates | 7 | 9 | 0 | .438 | 313 | 380 | 2-6 | 5-3 | 2-4 | 4-8 | 3-1 | Lost -1 | 2-2 |
| Mexico City Outlaws | 2 | 14 | 0 | .125 | 199 | 377 | 2-6 | 0-8 | 1-5 | 1-11 | 1-3 | Lost -9 | 0-4 |
| 2006 Alpha Conference Standings | |||||||||||||
| Blue | W | L | T | PCT | PF | PA | HOME | ROAD | DIV | CONF | NON-CONF | STREAK | LAST 4 |
| Winnipeg Bandits | 12 | 4 | 0 | .750 | 394 | 303 | 7-1 | 5-3 | 5-1 | 8-4 | 4-0 | Lost -1 | 3-1 |
| Norfolk Gladiators | 8 | 8 | 0 | .500 | 356 | 362 | 3-5 | 5-3 | 3-3 | 6-6 | 2-2 | Won 1 | 2-2 |
| Hampton Hurricanes | 7 | 9 | 0 | .438 | 291 | 302 | 2-6 | 5-3 | 2-4 | 5-7 | 2-2 | Lost -1 | 2-2 |
| Baltimore Griffins | 6 | 10 | 0 | .375 | 341 | 383 | 2-6 | 4-4 | 2-4 | 3-9 | 3-1 | Lost -2 | 2-2 |
| White | W | L | T | PCT | PF | PA | HOME | ROAD | DIV | CONF | NON-CONF | STREAK | LAST 4 |
| Waco Rangers | 9 | 8 | 0 | .529 | 428 | 350 | 4-4 | 5-4 | 4-3 | 6-7 | 3-1 | Won 1 | 3-1 |
| Buffalo Warriors | 9 | 8 | 0 | .529 | 345 | 300 | 7-2 | 2-6 | 3-4 | 6-7 | 3-1 | Lost -2 | 1-3 |
| Wellington Cavaliers | 8 | 8 | 0 | .500 | 412 | 372 | 5-3 | 3-5 | 3-3 | 7-5 | 1-3 | Won 2 | 3-1 |
| Montreal Voltigeurs | 5 | 11 | 0 | .313 | 295 | 399 | 4-4 | 1-7 | 3-3 | 3-9 | 2-2 | Lost -3 | 1-3 |
| Red | W | L | T | PCT | PF | PA | HOME | ROAD | DIV | CONF | NON-CONF | STREAK | LAST 4 |
| Chicago Mayhem | 12 | 4 | 0 | .750 | 437 | 380 | 7-1 | 5-3 | 3-3 | 9-3 | 3-1 | Won 2 | 2-2 |
| Texas Copperheads | 11 | 6 | 0 | .647 | 403 | 364 | 5-3 | 6-3 | 5-1 | 9-4 | 2-2 | Lost -1 | 2-2 |
| Oklahoma BlueFox | 8 | 8 | 0 | .500 | 380 | 362 | 4-4 | 4-4 | 2-4 | 6-6 | 2-2 | Won 2 | 3-1 |
| Fort Worth Stampede | 7 | 9 | 0 | .438 | 335 | 369 | 4-4 | 3-5 | 2-4 | 5-7 | 2-2 | Lost -3 | 1-3 |
| Green | W | L | T | PCT | PF | PA | HOME | ROAD | DIV | CONF | NON-CONF | STREAK | LAST 4 |
| Long Beach Storm | 10 | 7 | 0 | .588 | 398 | 322 | 6-3 | 4-4 | 4-2 | 9-4 | 1-3 | Won 3 | 3-1 |
| Seattle Seadogs | 8 | 8 | 0 | .500 | 355 | 381 | 2-6 | 6-2 | 4-2 | 6-6 | 2-2 | Won 1 | 3-1 |
| Saskatchewan Steelers | 7 | 9 | 0 | .438 | 355 | 411 | 5-3 | 2-6 | 2-4 | 6-6 | 1-3 | Won 1 | 2-2 |
| Los Angeles Armageddon | 5 | 11 | 0 | .313 | 295 | 455 | 3-5 | 2-6 | 2-4 | 4-8 | 1-3 | Lost -2 | 1-3 |